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"Penyakit blas pada padi yang disebabkan oleh cendawan pyricularia grisea, merupakan salah satu kendala dalam produksi beras Sumber gen ketahanan terhadap penyakit blas dijumpai pada spesies padi liar. Populasi silang ganda turunan IR64 terhadap penyakit blas ..."

"Analisis Morfologi dan Molekular Padi Transgenik cv. Nipponbare yang Membawa Gen CONSTANS (CO) Terkait Umur Pembungaan. Pembungaan merupakan proses penting yang mengawali produktivitas pada tanaman. Metode rekayasa genetika dengan mengintroduksi gen CONSTANS dari tanaman Arabidopsis thaliana (AtCO) ke dalam tanaman padi kultivar Nipponbare digunakan sebagai upaya peningkatan produksi padi. Gen CO diketahui mampu menginduksi terjadinya pembungaan yang lebih awal pada tanaman. Penelitian bertujuan mengetahui integrasi gen AtCO pada genom padi, pengaruh gen tersebut terhadap waktu pembungaan, dan karakter agronomi pada tanaman padi Nipponbare transgenik generasi T2. Hasil pengamatan morfologi menunjukkan bahwa tanaman padi transgenik cenderung memiliki karakter agronomi lebih baik dibandingkan tanaman padi kontrol, namun tidak menunjukkan waktu pembungaan lebih cepat. Analisis Polymerase Chain Reaction (PCR) menunjukkan 169 dari 227 tanaman padi transgenik memiliki gen hpt dan CO yang terintegrasi ke dalam genom padi.

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Flowering is an important process that initiates plant productivity. Rice (Oryza sativa cv. Nipponbare) was genetically engineered by introducing a CONSTANS (CO) gene from Arabidopsis thaliana (AtCO) to improve rice productivity. The CO gene is a gene responsible for inducing early flowering. The aims of the experiment were to use morphological and molecular analysis to study the integration of the AtCO gene and its influence on agronomic traits in the T2 generation of Nipponbare transgenic AtCO rice. Morphological observations showed that agronomic traits tended to be better in the transgenic plants than in the wild type (controls), although the transgenic plants flowered later than the wild type. Polymerase Chain Reaction (PCR) analysis showed that 169 out of 227 transgenic rice plants showed hpt and CO gene integration."

"Efektivitas Produksi Bioetanol dari Hirolisat Jerami Padi Menggunakan Ragi Bubuk dan Ragi Padat. Jerami padi merupakan salah satu limbah pertanian yang sangat melimpah di Indonesia. Jerami padi mengandung polisakarida dalam bentuk selulosa dan hemiselulosa, yang dapat dimanfaatkan sebagai bahan baku dalam produksi bioetanol. Penelitian bertujuan melihat efektivitas produksi bioetanol dari sampel hidrolisat jerami padi dengan menggunakan ragi roti (ragi bubuk ? F) dan ragi tapai (ragi padat ? S). Penelitian dilakukan dengan memfermentasikan sampel menggunakan kedua jenis ragi tersebut, dan isolat murni khamir Saccharomyces cerevisiae sebagai kontrol. Kadar glukosa diukur menggunakan glucometer dan kadar bioetanol dianalisis menggunakan high-performance liquid chromatography (HPLC). Penelitian menggunakan split plot design dengan dua faktor perlakuan; pemberian ragi (R) dan waktu fermentasi (T). Hasil penelitian menunjukkan bahwa kedua jenis ragi pada produksi kadar bioetanol dari sampel memberikan pengaruh yang tidak berbeda nyata. Namun perlakuan S menghasilkan kadar bioetanol yang lebih tinggi (5.1 g/L) dibandingkan dengan perlakuan F (4.8 g/L); laju produksi bioetanol pada perlakuan S juga lebih tinggi (1.3 g/L.j) dibandingkan dengan laju produksi bioetanol pada perlakuan F (1.2 g/L.j). Kesimpulan dari penelitian adalah penggunaan ragi Tapai lebih efektif dalam memproduksi bioetanol dari hidrolisat jerami padi.

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Rice straw is one of the most abundant forms of agricultural wastes in Indonesia. Rice straw contains polysaccharide in the form of cellulose and hemicellulose, which can be used as raw materials in the production of bioethanol. This study aims to examine the effectiveness of bioethanol production from rice straw?s hydrolyzate. Research was carried out by fermenting the sample using two types of starters (Baker's yeast, known as powder starter (F); and Tapai?s starter, known as solid starter (S) with a control of pure yeast, Saccharomyces cerevisiae. Glucose levels were measured using a glucometer, and bioethanol levels were analyzed using high-performance liquid chromatography (HPLC). In this study, split plot design was used as a data analyzer with two treatment factors: starter?s inoculum (R) and time of fermentation (T). This study shows that there is no significant difference between the starters? levels of bioethanol production. However, S?s treatment produced higher levels (5,1 g/L) of bioethanol compared to F?s (4,8 g/L); the rate of bioethanol production in S?s treatment is also higher (1,3 g/L.h) than that in F?s (1,2 g/L.h). This study concludes that Tapai?s starter is more effective in producing bioethanol from rice straw?s hydrolyzate."

"Aplikasi Marka Molekuler untuk Seleksi Ketahanan Blast pada Populasi Padi Haploid Ganda. Penyakit blast, yang disebabkan oleh jamur Pyricularia grisea Sacc., merupakan salah satu penyakit yang paling merusak padi. Penggunaan varietas padi tahan blast adalah salah satu cara yang paling efisien untuk mengendalikan penyakit blast pada padi. Padi tahan blast dapat dihasilkan melalui pemuliaan. Penggunaan marker-assisted selection (MAS) tersedia untuk mendukung seleksi galur tahan berdasarkan gen ketahanan. Tujuan dari penelitian adalah membandingkan respons ketahanan galur haploid ganda dengan varietas diferensial terhadap tiga ras blast Indonesia dan untuk mengidentifikasi gen-gen ketahanan yang menyebabkan ketahanan terhadap blast berdasarkan respon ketahanan dan evaluasi genotipe menggunakan marka molekuler. Empat puluh sembilan galur haploid ganda hasil persilangan ganda IR54/Parekaligolara//Bio110/Markuti diseleksi menggunakan marka molekuler berdasarkan gen target: Pib, Pi1, Pi2, Pi9, Pi33, Pir4, dan Pir7. Untuk membandingkan seleksi fenotipe, sepuluh galur monogenik LTH dari varietas diferensial digunakan. Semua tanaman diinokulasi dengan tiga ras blast yang diisolasi dari Indonesia. Hasil menunjukkan gen Pib berkontribusi membentuk ketahanan terhadap ras 123, sedangkan gen Pi1dan Pir7 berkontribusi membentuk ketahanan terhadap ras 123 dan 133. Gen Pi2, Pi9, Pi33, dan Pir4 tidak bertanggung jawab dengan ketahanan terhadap ras 123, 133, dan 173.

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Blast disease, caused by fungal Pyricularia grisea Sacc., is one of the most devastating diseases in rice. The use of blast-resistant rice varieties is one of the most efficient ways to control blast disease in rice. Blast-resistant varieties can be produced through breeding. The use of marker-assisted selection (MAS) available to support selection of resistant lines based on resistance gene. The objective of this research was to compare the resistance response of the double haploid lines with the differential varieties to three selected Indonesian blast races and to identify the resistance genes caused the resistance to blast based on the resistance response and the genotype evaluation using molecular markers. Forty-nine double haploid lines from a double crossing IR54/Parekaligolara//Bio110/Markuti were selected using molecular markers based on the targeted genes Pib, Pi1, Pi2, Pi9, Pi33, Pir4, and Pir7. To compare the phenotype selection, ten LTH monogenic lines of differential varieties were used. All plants tested were inoculated by three selected Indonesian blast races. The results show that the Pib gene caused a resistance to race 123, while the Pi1 and Pir7 genes caused a resistance to race 123 and 133. The Pi2, Pi9, Pi33, and Pir4 genes did not cause a resistance to race 123, 133, or 173."

"The rice transformation technology is not only provides. valuable methods for the introduction of useful genes into rice plant to improve important agronomic traits, but also helps in studying gene function and regulation based on rice genome sequence information. Knockout of genes by insertional mutagenesis is a straight forward method to identify gene functions .. "

"Detection of multiplex microsatellite markers in a single capillary array on a laser detection system is traditionally conducted with specific primers that are labelled with fluorescent dyes. An alternative method using fluorescent labels that are appended to 5' end of universal primer M13 instead of to the specific primers offers flexibility in designning multiplex panels and a less expensive method ... "

"Cell suspension culture could be defined as a process that allows rapidly dividing homogeneous suspension of cells to grow in liquid nutrient media. there are two main types of suspension cultures: (1) Batch cultures in which cells are nurtured in a fixed volume of medium until growth ceases and (2) continuous cultures in which cell growth is maintained by continuous replenishment of sterile nutrient media ... "

"Benzimidazole (BZ) resistance to gastrointestinal nematodes in small ruminants (sheep and goat) has become a significant problem worldwide. Evidences of anthelmintic resistance to albendazole in Indonesia has been reported from some government owned farms in West Java, Central Java, and Yogyakarta. Previous study on the sheep parasite H. contortus had shown that the BZ resistance was related to selection for individuals in a population possesing a spesific β-tubulin isotype 1 gene. The study is aimed to determine mutation on coding region of central part of β-tubulin isotype 1 gene of H. contortus resistant strain from Indonesia. Seven H. contortus worms were isolated from four BZ resistant sheep from two government farms (SPTD Trijaya, Kuningan, West Java, and UPTD Pelayanan Kesehatan Hewan, Bantul, Yogyakarta), and from a BZ susceptible sheep from Cicurug, Sukabumi, West Java. DNA was extracted individually from female H. contortus worms. A fragment of 520 bp β-tubulin isotype 1 gene exon 3, 4, 5 was amplified using the PCR technique and then sequenced. The results showed that a single mutation occurred in codon 200 (from phenilalanine to tyrosine) had caused benzimidazole resistance in H. contortus from SPTD Trijaya, Kuningan, West Java. Mutation in β-tubulin isotype 1 gene of H. contortus from UPTD Pelayanan Kesehatan Hewan, Yogyakarta, occurred in codon 198 (from glutamate to glycine), codon 201 (from cystein to stop codon), and codon 202 (from isoleucyne to stop codon). "

"Interaction of AtMEK1-EXGT in Arabidopsis thaliana after Wounding. Toto Hadiarto and Fumio Nanba. Protein interactions occur within cellular level of stimulated plant cells to relay signals from receptors to production of re- sponse. AtMEK1-EXGT interaction had been detected in non- treated Arabidopsis. In this research, interaction between AtMEK1, a mitogen-activated protein kinase kinase of Arabidopsis thaliana, and EXGT, endoxyloglucan trans- ferase, after the plant was wounded was examined using co-immunoprecipitation and in vitro phosphorylation assay. The results demonstrated that EXGT interact with AtMEK1 soon after and 10 minutes after wounding. In addition, AtMEK1 phosphorylation activity increased when increased level of EXGT was incorporated into the reaction mixture. These indicate that EXGT amplifies wound-caused phos- phorylation activity of AtMEK1. The results elucidate part of the AtMEKK1-AtMEK1-AtMPK4 cascade which is stimulated by wounding. How the complex interaction between EXGT, AtMEK1 and AtMPK4 fits within the cascade is remained to be uncovered."

"Genetic Diversity of Rice Blast Fungus Pyricularia oryzae Based on a Specific Primer Pot-2 (Rep-PCR). Tasliah, Reflinur, and Masdiar Bustamam. Rice blast (Pyricularia oryzae) is one of the most important diseases of rice. It can be very destructive in the field, when the environmental conditions are favourable. Information on genetic diversity of this pathogen could assist plant breeders in determining strategy for a successful control of the disease. This study was conducted to analyze genetic diversity in P. oryzae isolates by a pair of Pot-2 primers using the rep-PCR technique. These primers were designed from a transposon element of the entire blast fungus genomic DNA. DNA samples were extracted from 212 isolates of P. oryzae collected from two endemic areas of the disease in Indonesia, i.e., Tamanbogo, Lampung, and Sukabumi, West Java, as well as from some non-endemic areas in North Sumatra and West Sumatra). Results of the study indicated that the 212 isolates could clustered into 21 haplotypes. The most dominant haplotypes as indicated by their highest frequency of haplotypes were haplotype Pot 2-019 (54.46%) followed by haplotype Pot 2-021 (14.73%) and haplotipe Pot 2-016 (6.25%). Regardless of origins of the P. oryzae isolates, we found 6 haplotypes from Tamanbogo (out of 117 samples), 13 haplotypes from Sukabumi (out of 77 samples), and 11 haplotypes from North Sumatra and West Sumatra (out of 18 isolates). It seems that genetic diversity of the P. oryzae isolates was not affected by the total number of samples/isolates, but rather by place of the origin and rice genotypes from which the isolates were collected."