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Mia Fitria
"Saluran pencernaan merupakan organ-organ yang banyak dihuni oleh mikrobiota. Hubungan antara mikrobiota dan sel hospes memiliki dampak pada potensi metabolisme, kekebalan tubuh, serta respon neuroendokrin. Penelitian sebelumnya berhasil mengisolasi bakteri dari sampel mekonium, tiga diantaranya memiliki potensi probiotik seperti Bacillus subtilis MBF-30, Enterococcus hirae MBF-93, dan Staphylococcus hominis MBF-54. Tujuan dari penelitian ini adalah merancang proporsi galur-galur dalam koktail bakterial dan menganalisis kemampuan hidup galur-galur bakteri dalam suatu koktail, serta mengetahui proporsi masing-masing bakteri dalam suatu koktail dengan variasi waktu inkubasi. Analisis kemampuan hidup bersama setiap galur bakteri dilakukan dengan metode cross-streak. Hasil menunjukkan bahwa antar galur-galur bakteri mampu hidup bersama dalam koktail dengan tidak adanya zona hambat yang bermakna. Analisis kuantitatif dilakukan dengan menggunakan Real Time qPCR. Hasil analisis menunjukkan masing-masing bakteri dalam rancangan koktail bakteri Bacillus subtilis MBF-30, Enterococcus hirae MBF-93, dan Staphylococcus hominis MBF-54 berada dalam kondisi viabel pada waktu inkubasi jam ke-4, dan dengan perbandingan mendekati proporsional yaitu 1:0,75:0,5 dengan nilai kopi DNA/ml Bacillus subtilis MBF-30 adalah 9.0657e+11 log kopi DNA/ml, Enterococcus hirae MBF-93 adalah 1.7286e+17, dan Staphylococcus hominis MBF-54 adalah 2.167e+18.

Gastrointestinal tract is the most organ inhabited by microbiota. Interaction between microbiota and host cell has an impact in potencial metabolism, immune, and neuroendocrine responses. Previous studies have succeeded in isolating of the bacterial microbiota from meconium samples, three of which have probiotic potential such as Bacillus subtilis MBF-30, Enterococcus hirae MBF-93, and Staphylococcus hominis MBF-54. The aim of this study was to design of strain proportion in a bacterial cocktails, analyze viability of bacterial strains in cocktail condition, and determine the proportion of each bacterial strain in cocktail with variations incubation time. Analysis of the ability of each bacterial strain was carried out using cross-streak method. The result showed that each bacterial strains were able to coexist in cocktails with the absence of inhibition zone. Quantitative analyze was performed using Real Time qPCR. The results of analysis showed that each bacterial in cocktail bacterial Bacillus subtilis MBF-30: Enterococcus hirae MBF-93: Staphylococcus hominis MBF-54 was in viable condition at the incubation time of 4 hours, and with proportional ratio 1:0.75:0.5 with the value of DNA copy/ml Bacillus subtilis MBF-30 is 9.0657e+11 log DNA copy/ml, Enterococcus hirae MBF-93 is 1.7286e+17, and Staphylococcus hominis MBF-54 is 2.167e+18."
Depok: Fakultas Farmasi Universitas Indonesia, 2021
S-pdf
UI - Skripsi Membership  Universitas Indonesia Library
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Zaenal Arifin
"Translokasi bakteri merupakan kejadian yang diinisiasi oleh adanya reaksi inflamasi pada permukaan usus dan dapat menyebabkan terjadinya sepsis. Bifidobacterium anima/is subspesies lactis merupakan salah satu bakteri probiotik yang dapat memberikan efek anti-inflamasi, sehingga dapat menghambat terjadinya translokasi bakteri. Gen dnaK merupakan sekuens penanda yang dapat digunakan untuk deteksi B. anima/is subsp. lactis. Optimasi dilakukan untuk mendapatkan pasangan primer optimal dalam kuantifikasi B. anima/is subsp. lactis dengan metode kuantitatif Real-time PCR. Isolat DNA diisolasi dari sampel feses bayi menggunakan metode fenol-kloroform. Pasangan primer dirancang berdasarkan sekuen gen dnaK B.ani malis subsp.lacti s [ABOTO1000010.1] menggunakan program pri mer3. Optimasi primer dilakukan menggunakan 5 konsentrasi berbeda, yaitu 50/50, 100/100, 300/300, 500/500, dan 1.000/1.000 nM. Konsentrasi optimal pasangan primer F_HN019_dnaK dan R_HN019_dnaK untuk kurva standar adalah 1.000/ 1.000 nM dengan nilai efisiensi 95.397% dan R2 0,998. Konsentrasi pasangan primer 50/50--1.000/1.000 nM dapat digunakan untuk kuantifikasi DNA target dengan kisaran nilai Ct sebesar 16,13--31,89. Konsentrasi primer dan DNA sampel tidak berpengaruh dan berkorelasi terhadap nilai Ct. Konsentrasi sampel DNA target terkecil yang dapat terkuantifikasi dengan baik oleh pasangan primer F_HN019_dnaK dan R_HN019_dnaK 300/ 300 nM sampai dilusi 10-4 Pasangan primer F_HN019_dnaK dan R_HN019_dnaK dapat dikembangkan untuk kuantifikasi B. anima/is subsp. lactis dalam sampel feses bayi pada kejadian sepsis.

Bacterial translocation is an event that is initiated by the presence of an inflammatory reaction at the surface of the intestine and can lead to sepsis. Bifzdobacterium anima/is subspecies lactis is a probiotic bacterium that can provide anti-inflammatory effect, so as to prevent the occurrence of bacterial translocation. dnaK is a marker gene sequences that can be used for detection of B. anima/is subsp. lactis. Optimization is performed to obtain optimal primer pair in quantifying B. anima/is subsp. lactis by the method of real-time quantitative PCR. Isolate DNA were isolated from infant feces samples using phenol­ chloroform method. Primer pairs designed based on gene sequences B.anima/is subsp.lactis dnaK f ABOTO1000010.11 using primer3 program. The primary optimization is done using 5 different concentrations, namely 50/50, 100/100, 300/300, 500/500, and 1.000/1.000 nM. F HN019 dnaK optimal primer pair concentrations and R HN019 dnaK for standard curve were 1,000 I 1,000 nM with 95,397% efficiency values and R2 0.998. 50/50--1.000/1.000 nM concentration of primer pairs can be used for quantification of the target DNA with a range of Ct values of 16.13 to 31, 89. Primer concentration and DNA samples have no effect and relation with the Ct value. The smallest concentration of the target DNA sample that can be quantified well by F_HN019_dnaK and R HN019 dnaK primer pair 300/300 nM is up to dilution 10-4 R HN019 dnaK F_HN019_dnaK primer pairs can be developed for the quantification of B. anima/is subsp. lactis in fecal samples of infants on the incidence of sepsis."
Depok: Fakultas Matematika dan Ilmu Pengetahuan Alam Universitas Indonesia, 2013
S46522
UI - Skripsi Membership  Universitas Indonesia Library
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Meier, Remy
"The pathogenesis of inflammatory bowel disease (IBD) is not yet fully understood A genetic predisposition, some environmental factors and microbial flora of the grit are the key factors. The presence of bacteria in the intestinal lumen is a prerequisite for the development of IBD. In animal models, mice incapable of expressing IL, or IL invariably develop a colitis- or Crohn-like inflammation. No inflammation occurs if they grow up in a pathogen free environment or if they are fed with Lactobacillus sp when exposed to environmental bacteria. Thus, the absence of liminal bacteria or a different make-up there of prevents the development of inflammatory bowel disease in this model. Patients with IBD have been found to have a decreased stool excretion Lactobacillus andlor Bifidobacteria.
Furthermore, an increased number of bacteria adherents to the mucosa and within the epithelium has been demonstrated in quantitative studies. It appears that these bacteria trigger a strong abnormal mucosal immunological response, leading to intestinal epithelial cell injury mediated by activated T-cells, mononuclear cells and macrophages. If this response can not be down regulated by regulatory T-cells, mononuclear inflammatory cytokines are activated by stimulation of the intracellular transcription factor NF-kB. Recently it was shown that bacterial lipopolysaccharides can activate NF-kB by binding to two specific receptors on the cell membrane (Toll-like receptors [TLR's]) or intracellular receptors (NOD's).
New insights of the role of bacteria in IBD became available by identifying susceptibility genes for IBD. Several IBD susceptibility loci were recently identified. The IBD-l locus on chromosome 16 shows positive evidence for linkage in Crohn's disease and IBD-2 locus on chromosome l2 for ulcerative colitis. The evidence for' an association with Crohn's disease at the IBD-I locus have been shown to be attributed to mutations in the CARDI5/NOD2 gene. This gene is exressed in peripheral blood monocytes and in intestinal epithelial cells and serves as a key factor of innate mucosal response to luminal bacteria as an antibacterial factor.
The intact intercellular NOD2 protein binds LPS and activates NF-kB. This activation of the NF-kB signalling pathway in response to bacterial components plays a protective role in the mucosal epithelial cells for the host against inviting pathogens and an increased apoptosis of infected cells. There is evidence, that the defective NOD2 protein variants increase the susceptibility to pathogen invasion and a decrease in cellular apoptosis.
NF-kB plays a dual role in IBD. On the mucosal epithelial cells, bacterial components bind on NOD2 proteins and protect bacterial invasion. If this barrier mechanism is not intact, the bacterial invasion stimulates via TLR- and NOD2 receptors in immune-active cells (macrophages, T-cells and monocytes) NF-kB and triggers an aberrant inflammatory response leading to tissue damage. These new insights in the pathogenesis in IBD have led to new treatment possibilities including pre- and probiotics.
These therapies are aimed at directly modulating the host immune system to suppress intestinal inflammation. This has prompted considerable interest in manipulating the enteric microenvironment as a novel therapeutic strategy Several clinical studies showed promising results rising pre- and probiotics in patients with ulcerative colitis, pouchitis and Crohn's disease. The introduction of genetically engineered probiotic organism to produce and deliver anti-inflammatory cytokines or other biological relevant molecules to the mucosa offers further new potential for the treatment of IBD."
Jakarta: The Indonesian Journal of Gastroenterology Hepatology and Digestive Endoscopy, 2003
IJGH-4-2-Agt2003-50
Artikel Jurnal  Universitas Indonesia Library
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Eleftherios Mylonakis, editors
"This book provides a series of reports from the 1st International Conference on Model Hosts. This first of its kind meeting focused on invertebrate, vertebrate and amoeboid systems used for the study of host-pathogen interactions, virulence and immunity, as well as on the relevance of these pathogenesis systems and mammalian models. Importantly, a common, fundamental set of molecular mechanisms is employed by a significant number of microbial pathogens against a widely divergent array of metazoan hosts. Moreover, the evolutionarily conserved immune responses of these model hosts have contributed important insights to our understanding of the innate immune response of mammals."
New York: [, Springer], 2012
e20417586
eBooks  Universitas Indonesia Library
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Guillermo Lopez-Campos
"This is a review of recent advances on the use of DNA microarray for diagnosing foodborne pathogens. Rapid detection and characterization of foodborne pathogens is critical for food safety. Many relevant technologies have been intensively developed to date."
New York: Springer, 2012
e20405927
eBooks  Universitas Indonesia Library
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Windy Dwininda
"Keseimbangan berbagai jenis bakteri pada kulit sangat penting dalam menjaga kesehatan kulit. Permasalahan pada kulit wajah yang muncul salah satunya disebabkan oleh disbiosis mikroba. Penelitian dilakukan untuk menganalisis keberagaman mikrobiom bakteri yang terdapat pada kulit wajah dengan kondisi pH dan kelembaban beragam. Metode analisis diversitas dengan Next Generation Sequencing 16s rRNA. Jumlah responden yang digunakan pada penelitian ini sebanyak 144 sampel. Hasil analisis pada penelitian ini ditemukan bahwa kelas filum bakteri tertinggi Actinobacterium (49,72%), Proteobacterium (29,86%) dan Firmicutes (18,64%). Pada genus Cutibacterium (41,48%), Neisseriaceae (20,29), Staphylococcus (10,16%) ditemukan terbanyak pada kulit wajah dengan nilai kondisi pH dan kelembaban berbeda. Analisis diversitas alfa dengan indeks Chao1 (p=0,05) dan Faith PD(p=0.004) menunjukan kelimpahan mikrobiom signifikan lebih tinggi ditemukan pada pH tinggi dibandingkan pH normal. Analisis diversitas Alfa pada kelembaban tidak ditemukan signifikan terhadap kelimpahan bakteri mikrobiom wajah. Hasil diversitas beta ditemukan perbedaan kelimpahan mikrobiom bakteri pada sepuluh genus tertinggi yang ditemukan pada pH normal dan pH tinggi serta kelompok kelembaban dengan sangat lembab, lembab dan kering. Kesimpulan penelitian profil genus Cutibacterium, Neisseriaceae, Staphylococcus bakteri paling banyak ditemukan pada pH tinggi dan pH normal seta kelembaban sangat lembab, lembab dan kering. Cutibacterium, Neisseriaceae dan Staphylococcus menunjukan adanya peningkatan pH kulit maka kelimpahan bakteri tersebut semakin meningkat. Pada kelembaban kulit, kelimpahan Cutibacterium dan Staphylococcus menurun seiring penurunan nilai kelembaban kulit.

Balancing various types of bacteria on the skin is crucial for maintaining skin health. One of the issues that arise with facial skin is caused by microbial dysbiosis. Research was conducted to analyze the diversity of bacterial microbiomes on the facial skin with varying pH and moisture conditions. The diversity analysis method used Next Generation Sequencing 16s rRNA, and the study included 144 samples. The results of this research revealed that the highest bacterial phylum classes were Actinobacterium (49.72%), Proteobacterium (29.86%), and Firmicutes (18.64%). The genera Cutibacterium (41.48%), Neisseriaceae (20.29%), and Staphylococcus (10.16%) were the most abundant on the facial skin with different pH and moisture conditions. Alpha diversity analysis using Chao1 index (p=0.05) and Faith PD (p=0.004) indicated significantly higher microbial abundance found in high pH compared to normal pH. However, there was no significant difference in alpha diversity concerning the moisture level and facial bacterial microbiome abundance. Beta diversity analysis showed differences in bacterial microbiome abundance in the top ten genera found between normal pH and high pH, as well as between moisture groups categorized as very moist, moist, and dry. In conclusion, the research profiled the genera Cutibacterium, Neisseriaceae, and Staphylococcus as the most found bacteria in high pH and normal pH conditions, as well as very moist, moist, and dry moisture levels. Cutibacterium, Neisseriaceae, and Staphylococcus showed an increase in skin pH resulting in an increase in the abundance of these bacteria. On the other hand, the abundance of Cutibacterium and Staphylococcus decreased with decreasing skin moisture levels."
Jakarta: Fakultas Kedokteran Universitas Indonesia, 2023
T-pdf
UI - Tesis Membership  Universitas Indonesia Library
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Birge, Edward A.
New York: Springer, 2006
579.3 BIR b
Buku Teks  Universitas Indonesia Library
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"Bacterial oxidation technology is a competitive alternative for treating refractory gold. The utilization of bacterial oxidation in the mining industry is relatively recent and the introduction of microbiology and biochemistry to this area is not widely understood by mining companies. Many misconceptions and misunderstandings have resulted from insufficient information. This paper describes the practical aspects of bio-oxidation technology related to the biology and physiology of bacteria in associate with the role and behavior of bacteria in bacterial oxidation."
IMJ 3:1 (1997)
Artikel Jurnal  Universitas Indonesia Library
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Basle: F. Hoffman-La Roche & Co., [date of publication not identified]
579.3 BAC
Buku Teks  Universitas Indonesia Library
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"Bacterial polyhydroxyalkanoates (PHAs) are a class of polymers currently receiving much attention because of their
potential as renewable and biodegradable plastics. A wide variety of bacteria has been reported to produce PHAs
including Pseudomonas strains. These strains are known as versatile medium chain length PHAs (PHAs-mcl) producers
using fatty acids as carbon source. Oleic acid was used to produce PHAs-mcl using Pseudomonas putida PGA 1 by
continuous feeding of both nitrogen and carbon source, in a fed batch culture. During cell growth, PHAs also
accumulated, indicating that PHA production in this organism is growth associated. Residual cell increased until the
nitrogen source was depleted. At the end of fermentation, final cell concentration, PHA content, and productivity were
30.2 g/L, 44.8 % of cell dry weight, and 0.188 g/l/h, respectively."
Lembaga Penelitian Universitas Indonesia, 2007
Artikel Jurnal  Universitas Indonesia Library
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