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"ABSTRAKBenih bawal bintang memperlihatkan perubahan tingkah laku seperti kehilangan kemampuan berenang dan berkumpul di dasar kolam, diduga terinfeksi RSIVD. Real time PCR dengan SBYR green telah diaplikasikan secara luas untuk diagnosis penyakit. Kesederhanaan, sensitifitas, rentang deteksi yang dinamis, reproduktifitas, dan jaminan skrining dengan kecepatan waktu yang tinggi membuat real time PCR sesuai untuk mendeteksi virus (Niesters, 2002). Oleh karena itu dilakukan aplikasi metode real time PCR dengan SYBR green untuk mendeteksi RSIV pada benih bawal bintang. Penelitian ini menggunakan primer 1F dan 1R untuk skrining Megalocityvirus, grunt fin cell line untuk kultur RSIV, pengklonaan menggunakan vektor pGEM-T easy dan primer MCPspecR697-F4 dan MCP-specR888-R6 untuk deteksi RSIV dengan metode real time PCR menggunakan SYBR green. Karakterisasi dari CPE menunjukkan sel GF menjadi berbentuk bundar dan sel-sel GF terlihat berpendar pada inokulasi RSIV pada hari ke lima sampai ke tujuh. Kurva standar menghasilkan R2 0,99999, slope -2,41675 dan y-intercept 38,68938. Limit deteksi 10 salinan DNA. Spesimen klinis menunjukkan hasil positif pada jaringan hati, limpa dan ginjal. Jumlah salinan DNA paling banyak dari ekstraksi limpa yaitu: 6054 dan 4182 salinan DNA sedangkan pada organ ginjal sebanyak 72 dan 101 salinan DNA dan hati 1 dan 2 salinan DNA. Metode real time PCR menggunakan SYBR green berhasil diaplikasikan untuk mendeteksi RSIV pada benih ikan bawal bintang.

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ABSTRACTSnubnose pompano juvenile showed behavioral changes such as losed the ability to swim and congregated at the bottom of the pool, suspected of being infected RSIVD. Real time PCR with green SBYR has been widely applied to the diagnosis of the disease. Simplicity, sensitivity, dynamic range of detection, reproducibility, and the assurance screening with a high speed makes real time PCR according to detect viruses (Niesters, 2002). Therefore, it is done in real time application method with SYBR green PCR to detect RSIV on Snubnose pompano juvenile. This study using the primers 1F and 1R for screening Megalocityvirus, grunt fin cell line for RSIV culture, cloning using pGEM-T easy vector and primer MCPspecR697-F4 and MCP-specR888-R6 for RSIV detection by real-time PCR method using SYBR green.GF cells infected by RSIV showed round and flourescence as a result of CPE at day 5 to 7. Subnose pompano juvenile positive infected by RSIV at 191 bp. Standard curve equation R2: 0.99999, slope: -2.41675 and y-intercept: 38.68938. qPCR using primers MCP-specR674-F4 and MCP-specR888 R6 primer assay showed detection limit of 10 copies of the. Liver, spleen and kidneys of Subnose Dart juvenile were infected by RSIV, positively. The highest of copy number of DNA were shown in the spleen (6054 and 4182 copies DNA, respectively), while in kidney were 101 and 72 copies DNA respectively. The lowest copy number DNA were shown in the liver (1 to 2 copies DNA, respectively). SYBR green quantitative PCR method can be applied to detect RSIV on Subnose pompano juvenile."

"The study on characterization of red snapper (Latjunas malabaricus LUTJANIDAE) population based on mtDNA polymorphism in north coast of Java has been done...."

"Objectives of the study was to discover genetic variability and genetic relationship of paternal half sib population of nile tilapia (Oreochromis niloticus) under selection program scheme at research Institute for Freshwater Aquaculture,in Bogor West Java...."

"ABSTRAKPenelitian mengenai transformasi gen xiloglukanase pada A. mangium telah dilakukan oleh Hartati dkk pada tahun 2011, menghasilkan A. mangium transgenik yang mengoverekspresikan gen tersebut, sehingga pertumbuhan menjadi lebih cepat. Tanaman A. magium transgenik terus dipelihara dan disubkultur hingga saat ini. Oleh karena itu, penelitian yang dilakukan bertujuan untuk menguji stabilitas gen xiloglukanase pada A. mangium transgenik hasil perbanyakan in vitro. Penelitian terdiri atas dua bagian,yaitu analisis molekular dan morfologi. Hasil analisis molekular menunjukkan bahwa dari seluruh sampel yang digunakan, dua galur A. mangium transgenik, X11 dan X21, yang telah disubkultur beberapa kali menunjukkan keberadaan gen xiloglukanase. Hasil pengamatan morfologi tidak menunjukkan adanya pertumbuhan dalam hal tinggi dan diameter planlet, hal tersebut mungkin karena kultur yang digunakan mengalami kemunduran fisiologis.

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ABSTRACTThe study of xyloclucanase gene transformation in A. mangium was carried out by Hartati et al in 2011, yiedling a transgenic A. mangium that overexpressing the xyloglucanase gene, so the plants can grow more faster. The transgenic A. mangium is maintaned and subcultured continously. Therefore, the aim of study was to test the stability of xyloglucanase gene on transgenic A. mangium as a result of in Vitro propagation. Molecular and morphological approach were used in this research. The result showed that all of samples used, wild type A. mangium K , two line of transgenic A. mangium, X11 and X21 positively had xyloglucanase gene after the recurring subculture. The result of morphological observation did not show any alteration, because the culture used in the research undergo a physiological deterioration."

"The research aimed to role out the genetic variability and the classification of Java Salacca based on its morphological and molecular characters and to find out the genetic relationship among salacca cultivars that can be selected as parental material for breeding program. The salacca from Manonjaya (West Java), Banjarnegara, Bejalen, Lawu and Saratan (Central Java), Super Pondoh, Black Pondoh, Gading, Kembangarum, Madu and Manggala (Sleman-Yogyakarta) and Suwaru (East Java) were used in our study. Morphological characters and classification analysis by RAPD method with six random primers (OPA-11, OPA-16, OPA-17, OPA-18, OPX-15, OPX-17) were used as classification variable. The genetic variability among cultivars of Java Salacca was presented by the similarity matrixes and dendogram. Based on the morphological classification, the twelve salacca cultivars was divided at four clusters: 1) Manonjaya, Manggala, Suwaru and Kembangarum, 2) Super Pondoh and Black Pondoh, 3) Banjarnegara, Saratan and Bejalen, 4) gading, Madu and Lawu. Based on the molecular-RAPD method, the twelve salacca cultivars was also divided into four clusters but difference member of cultivars: 1) Super Pondoh, Banjarnegara, Black Pondoh, gading, Kembangarum and Suwaru, 2) Bejalen, Saratan and Lawu, 3) madu and Manggala, and 4) Manonjaya. Based on the two classification system used in the study I found the close relationship of Saratan Salacca and Bejalen Salacca from Central Java origin also Super Pondoh Salacca and Black Pondoh Salacca from Sleman-Yogyakarta origin."

"Information of the variability and heritability of quantitative characters on local mungbean germplasm are important for supporting breeding program. A total of 98 local mungbean varieties or accessions were evaluated at Cikeumeuh Experimental Farm,Bogor, during wet season of 2005. The experiment was conducted in a randomized block design with three replications. Each variety was planted in three rows of four meters long. Plant spacing was 40x20 cm, each hill contained two plants. The differences among the varieties were significant for all the characters studied, except for number of seeds per pod and pod length. High yielding varieties were recorded from Demak, Belu, Pati, and Jeneponto. These varieties had a combination of high number of pods per plant, large seed size and early maturity.Seeds weight per plant, pods per plant and seed size had high heritability and expected genetic advance.While the heritability and expected genetic advance for number of branches, pod length, and seeds per pod were all low. Plant height had a high genotypic variance associated with high heritability and high expected genetic advance. Similarly for days to flowering and days to maturity is genotypic in nature with high heritability coupled with a low expected genetic advance for days to flowering and moderate expected genetic advance for days to maturity. Pods per plant, seed size and seed weight per plant had a high genotypic variance associated with high heritability. The genetic advance of these characters predicted that the greatest gain for one generation of selection would be obtained by selection for pods per plant (45.07%), seed size (41.88%) and seed weight per plant (37.03%)."